PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 477174
Common NameARALYDRAFT_477174, ZFP1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 221aa    MW: 24675 Da    PI: 10.5605
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
477174genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000166890123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             ++C++C + F ++  L  H++ H
   477174 68 FSCNYCQRKFYSSQALGGHQNAH 90
             89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.21E-66595No hitNo description
PROSITE profilePS5015711.4276895IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDPSIKGDQE MLKIKKQGHQ DLELGLTLLP RGTTTSSELN LIDSFKTSSS STSHHHQQQE  60
HLADPRVFSC NYCQRKFYSS QALGGHQNAH KRERTLAKRG QYYKMTLSSL PSSAFAFGHG  120
SVSRFASMAS LPLHGSVNNR STLGIQAHST IHKPFLGRHT ASLSHIFKQS INQKPTIGKM  180
LPEKFHLEVA GSDNSKMIGH FKRNQEDHNQ FKKIDLTLKL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATHZFPA0.0L39644.1 Arabidopsis thaliana zinc finger protein 1 (ZFP1) mRNA, complete cds.
GenBankATU535010.0U53501.1 Arabidopsis thaliana chromosome I cosmid g8261 DNA (cytosine-5-) methyltransferase, zinc finger protein 1, nucleoporin 98, poly A+ RNA export protein, plasma membrane ATPase 2, and serine/threonine protein kinase genes, complete cds.
GenBankBT0264060.0BT026406.1 Arabidopsis thaliana At1g80730 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF23A50.0AC011713.2 Arabidopsis thaliana chromosome 1 BAC F23A5 sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887812.11e-162zinc-finger protein 1
SwissprotQ424851e-140ZFP1_ARATH; Zinc finger protein 1
TrEMBLD7KX251e-162D7KX25_ARALL; Zinc-finger protein 1
STRINGfgenesh2_kg.2__2304__AT1G80730.11e-162(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM118581628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-129zinc-finger protein 1